STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS13AVacuolar protein sorting 13 homolog A. (3572 aa)    
Predicted Functional Partners:
VAPB
VAMP associated protein B and C.
    
 
 0.737
VAPA
VAMP associated protein A.
    
 
 0.681
DBR1
Debranching RNA lariats 1.
    
   0.665
RINT1
RAD50 interactor 1.
      
 0.635
PDZD8
PDZ domain containing 8.
      
 0.629
ZW10
Zw10 kinetochore protein.
      
 0.616
VPS13B
Vacuolar protein sorting 13 homolog B.
   
  
 0.614
MAP3K21
Mitogen-activated protein kinase kinase kinase 21.
      
 0.583
PIGG
Phosphatidylinositol glycan anchor biosynthesis class G.
      
 0.568
VPS35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.564
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.