STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYNE1Spectrin repeat containing nuclear envelope protein 1. (8799 aa)    
Predicted Functional Partners:
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.990
SUN2
Sad1 and UNC84 domain containing 2.
    
 0.988
LMNA
Lamin A/C; Belongs to the intermediate filament family.
   
 0.932
EMD
Emerin.
    
 
 0.913
SUN3
Sad1 and UNC84 domain containing 3.
    
 0.837
SUN5
Sad1 and UNC84 domain containing 5.
    
 0.815
SYNE2
KASH domain-containing protein.
   
 0.782
SYNE4
Spectrin repeat containing nuclear envelope family member 4.
    
 0.775
LMNB1
Lamin B1; Belongs to the intermediate filament family.
   
 0.730
SPAG4
Sperm associated antigen 4.
    
 0.719
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.