Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABCF2Uncharacterized protein. (628 aa)    
Predicted Functional Partners:
ABCE1
ATP binding cassette subfamily E member 1.
   
 
 0.949
EIF5B
Eukaryotic translation initiation factor 5B.
  
 
 0.837
MRPL4
Mitochondrial ribosomal protein L4.
   
 
 0.803
ACAD9
Acyl-CoA dehydrogenase family member 9.
   
   0.793
ABCG5
ABC2_membrane domain-containing protein.
    
 
 0.738
PA2G4
Peptidase_M24 domain-containing protein.
  
 
 0.729
POLR1A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.707
IPO4
Importin 4.
   
    0.705
ABCB7
ATP binding cassette subfamily B member 7.
      
 0.697
EEF1G
Eukaryotic translation elongation factor 1 gamma.
   
 
 0.691
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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