Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TCP11L1T-complex 11 like 1. (508 aa)    
Predicted Functional Partners:
TTC5
Tetratricopeptide repeat domain 5.
    
   0.806
DEPDC7
DEP domain containing 7.
 
    
 0.731
AXIN1
Axin 1.
      
 0.584
PRRG4
Proline rich and Gla domain 4.
      
 0.572
CCDC73
Coiled-coil domain containing 73.
      
 0.571
QSER1
Glutamine and serine rich 1.
      
 0.533
CSTF3
Cleavage stimulation factor subunit 3.
      
 0.504
CCDC47
Coiled-coil domain containing 47.
      
 0.448
G3SNF2_LOXAF
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
 
 0.430
TUBB6
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
 
 0.430
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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