Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VWA3AVon Willebrand factor A domain containing 3A. (1148 aa)    
Predicted Functional Partners:
PDZD9
PDZ domain containing 9.
      
 0.717
DRD3
Dopamine receptor D3; Belongs to the G-protein coupled receptor 1 family.
      
 0.653
ODF3B
Outer dense fiber of sperm tails 3B.
      
 0.641
NTN4
Netrin 4.
      
 0.629
POLR3E
RNA polymerase III subunit E.
      
 0.624
MOSMO
Modulator of smoothened.
 
    
 0.600
MYCBPAP
MYCBP associated protein.
      
 0.594
IQCD
IQ motif containing D.
      
 0.592
WDR19
WD repeat domain 19.
      
 0.578
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
      
 0.570
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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