close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM50AFamily with sequence similarity 50 member A. (364 aa)    
Predicted Functional Partners:
SLU7
SLU7 homolog, splicing factor.
   
 
  0.619
ALYREF
Aly/REF export factor.
   
  0.598
C9orf78
Chromosome 9 open reading frame 78.
    
 0.579
CDC40
Cell division cycle 40.
   
 
  0.570
PRKRIP1
PRKR interacting protein 1.
   
 
 0.560
FAM32A
Family with sequence similarity 32 member A.
    
  0.557
CWC22
CWC22 spliceosome associated protein homolog.
    
  0.548
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
   
  0.505
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
   
  0.505
SDE2
SDE2 telomere maintenance homolog.
     
 0.498
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.