STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM50AFamily with sequence similarity 50 member A. (364 aa)    
Predicted Functional Partners:
SLU7
SLU7 homolog, splicing factor.
   
 0.820
FAM32A
Family with sequence similarity 32 member A.
    
 0.818
SDE2
SDE2 telomere maintenance homolog.
    
 0.799
CACTIN
Uncharacterized protein.
    
 0.763
CDC40
Cell division cycle 40.
   
  0.755
PPIL1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.726
SYF2
Uncharacterized protein.
   
 0.720
G3U6T9_LOXAF
Uncharacterized protein.
   
 0.720
PRKRIP1
PRKR interacting protein 1.
   
 
 0.719
C9orf78
Chromosome 9 open reading frame 78.
    
 0.718
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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