STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM42Tripartite motif containing 42. (724 aa)    
Predicted Functional Partners:
TRIM69
Tripartite motif containing 69.
      
 0.589
TRIM41
Uncharacterized protein.
      
 0.524
TRIM23
Tripartite motif containing 23.
    
 0.500
IGBP1
Uncharacterized protein.
    
 
 0.458
SAXO1
Stabilizer of axonemal microtubules 1.
   
 0.418
C10orf120
Chromosome 10 open reading frame 120.
   
  
 0.412
KCTD19
Potassium channel tetramerization domain containing 19.
  
 
   0.403
SPRED3
Sprouty related EVH1 domain containing 3.
      
 0.400
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.