STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC62Uncharacterized protein. (455 aa)    
Predicted Functional Partners:
GAK
Cyclin G associated kinase.
      
 0.725
PICK1
Protein interacting with PRKCA 1.
      
 0.712
SPATA16
Spermatogenesis associated 16.
      
 0.681
DPY19L1
Dpy-19 like C-mannosyltransferase 1.
      
 0.600
SPACA1
Sperm acrosome associated 1.
      
 0.579
AGFG1
ArfGAP with FG repeats 1.
      
 0.578
HIP1R
Huntingtin interacting protein 1 related.
 
    
 0.548
IFT20
Intraflagellar transport 20.
      
 0.521
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
      
 0.456
ACMSD
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily.
      
 0.449
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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