STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STK40Serine/threonine kinase 40. (441 aa)    
Predicted Functional Partners:
VAC14
VAC14 component of PIKFYVE complex.
   
 
 0.727
YARS1
Tyrosine--tRNA ligase.
      
 0.723
DNAJB4
DnaJ heat shock protein family (Hsp40) member B4.
   
 
 0.723
SOAT1
O-acyltransferase.
      
 0.701
COP1
COP1 E3 ubiquitin ligase.
    
 
 0.663
CABIN1
Calcineurin binding protein 1.
    
 
 0.659
TRIB1
Tribbles pseudokinase 1.
    
 
0.601
POLI
DNA polymerase iota.
   
 
 0.585
USP33
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
    
 
 0.584
CTC1
CST telomere replication complex component 1.
      
 0.583
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.