STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C9orf78Chromosome 9 open reading frame 78. (289 aa)    
Predicted Functional Partners:
SLU7
SLU7 homolog, splicing factor.
   
 
 0.954
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 
 0.843
PRPF8
Pre-mRNA processing factor 8.
    
 
 0.842
MED22
Mediator complex subunit 22.
   
  
 0.796
PRPF38A
Pre-mRNA processing factor 38A.
   
  
 0.736
CWC22
CWC22 spliceosome associated protein homolog.
    
 0.716
MED18
Mediator of RNA polymerase II transcription subunit 18; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
   
    0.681
PFDN6
Prefoldin subunit 6.
   
    0.681
PRKRIP1
PRKR interacting protein 1.
   
 
 0.679
FAM32A
Family with sequence similarity 32 member A.
   
 
  0.674
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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