STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POGKPogo transposable element derived with KRAB domain. (608 aa)    
Predicted Functional Partners:
TIGD3
Tigger transposable element derived 3.
      
 0.716
LRRC52
Leucine rich repeat containing 52.
      
 0.716
TIGD5
Tigger transposable element derived 5.
      
 0.715
NAIF1
Nuclear apoptosis inducing factor 1.
   
  
 0.684
PGBD1
PiggyBac transposable element derived 1.
    
 
 0.662
UCK2
Uridine-cytidine kinase 2.
    
 
 0.653
ZBED1
Zinc finger BED-type containing 1.
   
  
 0.622
PGBD2
PiggyBac transposable element derived 2.
    
 
 0.620
GIN1
Gypsy retrotransposon integrase 1.
      
 0.615
JRKL
JRK like.
      
 0.612
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.