STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC40Coiled-coil domain containing 40. (967 aa)    
Predicted Functional Partners:
CCDC39
Coiled-coil domain containing 39.
    
 
 0.832
CCDC65
Coiled-coil domain containing 65.
   
 
 0.773
CCDC114
Coiled-coil domain containing 114.
   
  
 0.768
LRRC6
Leucine rich repeat containing 6.
   
 
 0.695
SPEF2
Sperm flagellar 2.
    
 0.690
CCDC151
Coiled-coil domain containing 151.
   
 0.679
DNAAF1
Dynein assembly factor 1, axonemal.
    
 
 0.678
DNAI2
Dynein axonemal intermediate chain 2.
      
 0.673
DRC3
Dynein regulatory complex subunit 3.
   
 
 0.670
ARMC4
Armadillo repeat containing 4.
    
 
 0.661
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.