STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX6DEAD-box helicase 6; Belongs to the DEAD box helicase family. (483 aa)    
Predicted Functional Partners:
EDC3
Enhancer of mRNA decapping 3.
   
 0.999
LSM1
U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.
   
 0.996
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.995
EDC4
Enhancer of mRNA decapping 4.
   
 0.990
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 0.986
DCP1A
Decapping mRNA 1A.
   
 0.983
DCP1B
Decapping mRNA 1B.
   
 0.975
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 0.974
DCP2
Decapping mRNA 2.
   
 0.974
LSM14A
LSM14A mRNA processing body assembly factor.
   
 
 0.964
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.