STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3T6Q3_LOXAFRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)    
Predicted Functional Partners:
MAGOHB
Mago homolog B, exon junction complex subunit.
   
 0.967
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.959
RANBP2
RAN binding protein 2.
   
 0.956
CASC3
CASC3 exon junction complex subunit.
   
 0.951
G3UN69_LOXAF
Uncharacterized protein.
    
 0.948
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.937
UPF1
UPF1 RNA helicase and ATPase.
    
 0.914
SRSF1
Uncharacterized protein.
   
 0.903
PYM1
PYM homolog 1, exon junction complex associated factor.
    
 
 0.893
SMG7
SMG7 nonsense mediated mRNA decay factor.
    
 0.872
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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