STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTX3Pentraxin 3. (383 aa)    
Predicted Functional Partners:
TNFAIP6
TNF alpha induced protein 6.
   
 
 0.819
FGF2
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.757
MBL2
Mannose binding lectin 2.
   
 
 0.663
AMBP
Alpha-1-microglobulin/bikunin precursor.
      
 0.559
SORD
Sorbitol dehydrogenase.
      
 0.484
FGF6
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.481
FGF17
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.479
G3TGS6_LOXAF
Fibrinogen C-terminal domain-containing protein.
    
 
 0.471
G3UNN8_LOXAF
Fibrinogen C-terminal domain-containing protein.
    
 
 0.471
SFTPD
Surfactant protein D.
   
 
 0.458
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.