STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG4DCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (473 aa)    
Predicted Functional Partners:
GABARAP
GABA type A receptor-associated protein.
   
 0.970
GABARAPL1
GABA type A receptor associated protein like 1.
   
 0.970
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.757
G3TQR5_LOXAF
Uncharacterized protein.
   
 0.716
MAP1LC3B
Uncharacterized protein.
   
 0.712
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
   
 0.712
ATG3
Autophagy-related protein 3.
   
 
 0.670
G3TFZ3_LOXAF
Uncharacterized protein.
   
 0.666
G3UE69_LOXAF
Uncharacterized protein.
   
 0.666
ULK1
Unc-51 like autophagy activating kinase 1.
   
 
 0.609
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.