STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRMPD2FERM and PDZ domain containing 2. (1281 aa)    
Predicted Functional Partners:
PTPN20
Protein tyrosine phosphatase non-receptor type 20.
 
 
 0.927
REM1
GTP-binding protein; Belongs to the small GTPase superfamily. RGK family.
    
 0.743
SNTA1
Syntrophin alpha 1.
      
 0.715
PTPN7
Protein tyrosine phosphatase non-receptor type 7.
 
 
 0.661
PTPN18
Protein tyrosine phosphatase non-receptor type 18.
 
 
  0.611
IFT57
Intraflagellar transport 57.
    
 0.516
IFT80
Intraflagellar transport 80.
   
 0.513
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.507
IFT172
Intraflagellar transport 172.
    
 0.506
TRAF3IP1
TRAF3 interacting protein 1.
    
 0.505
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.