STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL11A1Collagen type XI alpha 1 chain. (1803 aa)    
Predicted Functional Partners:
COL5A2
Collagen type V alpha 2 chain.
  
0.734
COL2A1
Collagen type II alpha 1 chain.
  
0.644
COL1A2
Collagen type I alpha 2 chain.
  
0.625
COL1A1
Collagen type I alpha 1 chain.
  
0.618
COL3A1
Collagen type III alpha 1 chain.
  
 
0.588
ZNF652
Zinc finger protein 652.
   
 0.486
LUM
Lumican.
   
 0.481
SLC39A7
Solute carrier family 39 member 7.
     
 0.465
SLC16A3
Solute carrier family 16 member 3.
    
 
 0.458
MFSD8
Major facilitator superfamily domain containing 8.
      
 0.457
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.