STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP27Matrix metallopeptidase 27. (512 aa)    
Predicted Functional Partners:
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.634
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.501
TIMP4
TIMP metallopeptidase inhibitor 4.
    
 0.496
MMP15
Matrix metallopeptidase 15.
  
0.446
COL6A6
Collagen type VI alpha 6 chain.
   
 0.441
MMP14
Matrix metallopeptidase 14.
  
0.436
MMP7
Matrix metallopeptidase 7.
  
0.435
COL4A4
Collagen type IV alpha 4 chain.
   
 0.435
COL5A3
Collagen type V alpha 3 chain.
   
 0.435
COL7A1
Collagen type VII alpha 1 chain.
   
 0.428
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.