STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF144BRBR-type E3 ubiquitin transferase. (303 aa)    
Predicted Functional Partners:
TMEM150A
Transmembrane protein 150A.
      
 0.584
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.583
HSPH1
Heat shock protein family H (Hsp110) member 1.
    
 
 0.572
RNF216
Ring finger protein 216.
    
 0.549
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.546
RBM43
RNA binding motif protein 43.
   
  
 0.543
UBE2L6
Ubiquitin conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.535
UBE2L5
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.535
SH3BGRL
SH3 domain-binding glutamic acid-rich-like protein; Belongs to the SH3BGR family.
      
 0.521
FRMD4A
FERM domain containing 4A.
      
 0.520
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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