STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRDTUncharacterized protein. (327 aa)    
Predicted Functional Partners:
G3SZ57_LOXAF
TAFII55_N domain-containing protein.
    
 
 0.669
DMAP1
DNA methyltransferase 1 associated protein 1.
    
 
 0.565
E2F1
E2F transcription factor 1.
    
 
 0.560
NSD3
Nuclear receptor binding SET domain protein 3.
   
 
 0.530
CDK9
Cyclin dependent kinase 9; Belongs to the protein kinase superfamily.
   
 
 0.527
JMJD6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
    
 
 0.522
TAF1
Transcription initiation factor TFIID subunit.
    
 
0.521
EP300
E1A binding protein p300.
   
0.477
YEATS4
YEATS domain containing 4.
    
 
 0.455
RUVBL1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 
 0.447
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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