STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBN2Ubinuclein 2. (1275 aa)    
Predicted Functional Partners:
TAF1B
TATA-box binding protein associated factor, RNA polymerase I subunit B.
   
 0.795
TAF1D
TATA-box binding protein associated factor, RNA polymerase I subunit D.
    
 0.747
HIRA
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
   
 
 0.587
RRN3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.571
TBP
TATA-box binding protein.
    
 0.564
TBPL1
TATA-box binding protein like 1.
    
 0.564
TBPL2
TATA-box binding protein like 2.
    
 0.564
CABIN1
Calcineurin binding protein 1.
   
 
 0.532
POLR1A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.531
POLR1E
RNA polymerase I subunit E.
     
 0.515
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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