STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMNDC1Survival motor neuron domain containing 1. (238 aa)    
Predicted Functional Partners:
DDX46
DEAD-box helicase 46.
   
 
 0.964
PHF5A
PHD finger protein 5A.
     
 0.962
RBM17
RNA binding motif protein 17.
   
 
 0.952
U2SURP
U2 snRNP associated SURP domain containing.
    
  0.949
PRPF6
Pre-mRNA processing factor 6.
    
 
 0.921
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
     
 0.862
SF3B1
Splicing factor 3b subunit 1.
   
 0.781
PUF60
Poly(U) binding splicing factor 60.
   
 0.767
SF3B3
Splicing factor 3b subunit 3.
  
 
 0.741
DHX15
DEAH-box helicase 15.
   
 
  0.740
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.