STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC38Tetratricopeptide repeat domain 38. (468 aa)    
Predicted Functional Partners:
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
 
    
 0.625
FAM118A
Family with sequence similarity 118 member A.
      
 0.533
MANSC4
MANSC domain containing 4.
      
 0.515
LRIT1
Leucine rich repeat, Ig-like and transmembrane domains 1.
      
 0.509
KIAA1958
KIAA1958.
      
 0.453
DDX28
DEAD-box helicase 28.
      
 0.444
ZCCHC17
Zinc finger CCHC-type containing 17.
      
 0.442
CLIP3
CAP-Gly domain containing linker protein 3.
      
 0.416
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.