STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RGP1RGP1 homolog, RAB6A GEF complex partner 1. (391 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.995
VPS53
VPS53 subunit of GARP complex.
     
 0.747
VPS52
VPS52 subunit of GARP complex.
     
 0.740
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.734
RAB6B
RAB6B, member RAS oncogene family.
    
 0.726
RAB6A
RAB6A, member RAS oncogene family.
    
 0.726
VPS54
VPS54 subunit of GARP complex.
     
 0.724
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.704
VPS51
VPS51 subunit of GARP complex.
   
 
 0.674
STX16-NPEPL1
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.653
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.