STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG16L1Autophagy related 16 like 1. (624 aa)    
Predicted Functional Partners:
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.998
WIPI2
WD repeat domain, phosphoinositide interacting 2.
   
 0.997
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.997
RAB33B
RAB33B, member RAS oncogene family.
    
 0.996
WIPI1
WD repeat domain, phosphoinositide interacting 1.
   
 0.983
NOD2
Nucleotide binding oligomerization domain containing 2.
    
 0.983
NOD1
Nucleotide binding oligomerization domain containing 1.
    
 0.975
RB1CC1
ATG11 domain-containing protein.
   
 0.972
ATG3
Autophagy-related protein 3.
   
 0.970
GABARAP
GABA type A receptor-associated protein.
    
 0.954
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.