STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMOC1SPARC related modular calcium binding 1. (431 aa)    
Predicted Functional Partners:
SALL1
Spalt like transcription factor 1.
      
 0.638
CABP7
Calcium binding protein 7.
      
 0.586
SLC38A4
Solute carrier family 38 member 4.
      
 0.578
TOX3
TOX high mobility group box family member 3.
      
 0.569
FBXL17
F-box and leucine rich repeat protein 17.
      
 0.522
NAP1L4
Nucleosome assembly protein 1 like 4; Belongs to the nucleosome assembly protein (NAP) family.
      
 0.516
EFNA1
Ephrin A1; Belongs to the ephrin family.
      
 0.497
EPRS1
Glutamyl-prolyl-tRNA synthetase.
      
 0.479
LGI2
Leucine rich repeat LGI family member 2.
      
 0.472
JADE1
Jade family PHD finger 1.
      
 0.454
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.