STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RUBCNRubicon autophagy regulator. (957 aa)    
Predicted Functional Partners:
UVRAG
C2 domain-containing protein.
    
 0.995
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.937
PIK3R4
Phosphoinositide-3-kinase regulatory subunit 4.
    
 
 0.804
BECN1
Beclin 1.
    
 
 0.782
BECN2
Beclin 2.
    
 
 0.782
RAB7A
RAB7A, member RAS oncogene family.
    
 
 0.740
ATG14
Autophagy related 14.
    
 
 0.728
STARD3
StAR related lipid transfer domain containing 3.
      
 0.569
PSMB6
Proteasome subunit beta.
   
  
 0.539
SERINC5
Serine incorporator 5.
      
 0.524
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.