STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC47Coiled-coil domain containing 47. (485 aa)    
Predicted Functional Partners:
TMCO1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling; Belongs to the TMCO1 family.
    
 
 0.916
NCLN
Nicalin.
    
 
 0.911
TMEM147
Transmembrane protein 147.
    
 
 0.880
RPL38
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
 
 0.712
WDR83OS
WD repeat domain 83 opposite strand.
    
 
 0.704
RPL18A
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.
   
   0.688
SEC61B
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
   0.686
SEC61A1
SEC61 translocon alpha 1 subunit.
   
 
 0.685
SEC61A2
SEC61 translocon alpha 2 subunit.
   
 
 0.685
RPL3
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.684
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.