STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIMVimentin; Belongs to the intermediate filament family. (466 aa)    
Predicted Functional Partners:
BANF1
Barrier to autointegration factor 1.
   
 0.504
BANF2
Barrier to autointegration factor 2.
   
 0.504
EMD
Emerin.
    
 0.463
NES
Nestin; Belongs to the intermediate filament family.
    
 
0.462
ERMN
Ermin.
   
  
 0.428
AKAP12
A-kinase anchoring protein 12.
   
 
 0.421
S100B
Protein S100; Belongs to the S-100 family.
   
 
 0.420
G3T0K9_LOXAF
Uncharacterized protein.
   
  
 0.418
PECAM1
Platelet and endothelial cell adhesion molecule 1.
    
 0.418
PVALB
Parvalbumin; Belongs to the parvalbumin family.
    
 0.417
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.