STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSX1Visual system homeobox 1. (363 aa)    
Predicted Functional Partners:
ZMAT1
Zinc finger matrin-type 1.
      
 0.628
ATOH7
Atonal bHLH transcription factor 7.
   
  
 0.609
G3U441_LOXAF
Fork-head domain-containing protein.
   
  
 0.607
PTF1A
Pancreas associated transcription factor 1a.
   
  
 0.573
SCGN
Secretagogin, EF-hand calcium binding protein.
      
 0.525
G3TYQ5_LOXAF
C1q domain-containing protein.
      
 0.525
PRDM8
PR/SET domain 8.
   
  
 0.518
NXNL1
Nucleoredoxin like 1.
   
  
 0.488
ALX3
ALX homeobox 3.
   
  
0.471
FOXN1
Forkhead box N1.
   
  
 0.437
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.