STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDM8Lysine demethylase 8. (416 aa)    
Predicted Functional Partners:
RCCD1
RCC1 domain containing 1.
    
 
 0.683
RABEP2
Rabaptin, RAB GTPase binding effector protein 2.
      
 0.578
JMJD6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
      
 0.576
JMJD4
Jumonji domain containing 4.
      
0.532
MTG2
Mitochondrial ribosome associated GTPase 2.
 
 
    0.525
KDM5A
Lysine demethylase 5A.
      
 0.524
BBS7
Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.
 
      0.488
RPS6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
   0.485
G3TZD2_LOXAF
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
   0.485
G3UES3_LOXAF
Uncharacterized protein.
    
   0.485
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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