STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS54VPS54 subunit of GARP complex. (977 aa)    
Predicted Functional Partners:
VPS52
VPS52 subunit of GARP complex.
    
 0.999
VPS53
VPS53 subunit of GARP complex.
   
 0.998
VPS51
VPS51 subunit of GARP complex.
   
 0.992
STX16-NPEPL1
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.911
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.896
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.896
COG3
Component of oligomeric golgi complex 3.
     
 0.894
COG7
Component of oligomeric golgi complex 7.
     
 0.893
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 0.890
VPS50
VPS50 subunit of EARP/GARPII complex.
   
 
 0.876
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.