STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC1Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (305 aa)    
Predicted Functional Partners:
THBS1
Thrombospondin 1.
    
 0.964
SDC4
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
0.962
HPSE2
Heparanase 2 (inactive).
     
 0.956
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.953
HPSE
Heparanase.
     
 0.951
SDC2
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
  
 
0.948
ITGAV
Integrin subunit alpha V; Belongs to the integrin alpha chain family.
     
 0.946
THBS2
Thrombospondin 2.
    
 0.938
MMP9
Matrix metallopeptidase 9.
    
 0.937
THBS4
Thrombospondin 4.
    
 0.918
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.