STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD42Ankyrin repeat domain 42. (497 aa)    
Predicted Functional Partners:
PCF11
PCF11 cleavage and polyadenylation factor subunit.
 
  
 
 0.597
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 
 0.594
PPP1R8
Protein phosphatase 1 regulatory subunit 8.
   
  
 0.582
HSDL2
Hydroxysteroid dehydrogenase like 2.
    
 0.577
ACBD3
Acyl-CoA binding domain containing 3.
    
 0.572
IQUB
IQ motif and ubiquitin domain containing.
   
 
 0.571
DNAAF1
Dynein assembly factor 1, axonemal.
   
  0.553
ZBBX
Zinc finger B-box domain containing.
   
    0.542
SGTB
Small glutamine rich tetratricopeptide repeat containing beta.
   
 0.506
RAB30
RAB30, member RAS oncogene family.
      
 0.461
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.