STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPATA20Spermatogenesis-associated protein 20; May play a role in fertility regulation. (789 aa)    
Predicted Functional Partners:
TYMS
Thymidylate synthetase.
    
  0.838
HMBS
Hydroxymethylbilane synthase.
    
  0.809
SPATA17
Spermatogenesis associated 17.
      
 0.579
SPATA6
Spermatogenesis associated 6.
      
 0.571
COASY
Coenzyme A synthase.
      
 0.526
PUSL1
tRNA pseudouridine synthase.
      
 0.524
SPATA22
Spermatogenesis associated 22.
      
 0.515
SPATA4
Spermatogenesis associated 4.
      
 0.503
SRRM1
Serine and arginine repetitive matrix 1.
      
 0.480
SPATA7
Spermatogenesis associated 7.
      
 0.455
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.