STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3TTS9_LOXAFPDZ domain-containing protein. (153 aa)    
Predicted Functional Partners:
PDZRN4
PDZ domain containing ring finger 4.
 
 
    0.904
PDZRN3
PDZ domain containing ring finger 3.
 
 
    0.904
PDZD4
PDZ domain containing 4.
 
 
    0.874
BIRC6
Baculoviral IAP repeat containing 6.
   
 0.737
MIB2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.694
UBE2V1
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.680
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.592
RIPK4
Receptor interacting serine/threonine kinase 4.
   
 0.565
TRADD
TNFRSF1A associated via death domain.
    
 0.558
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.555
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.