STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM236Transmembrane protein 236. (347 aa)    
Predicted Functional Partners:
IFT80
Intraflagellar transport 80.
      
 0.574
IQSEC3
IQ motif and Sec7 domain 3.
      
 0.571
TXLNB
Taxilin beta.
      
 0.558
PRPF6
Pre-mRNA processing factor 6.
      
 0.539
IGSF5
Uncharacterized protein.
      
 0.536
RBMS3
RNA binding motif single stranded interacting protein 3.
      
 0.521
CCDC158
Coiled-coil domain containing 158.
      
 0.443
CALN1
Calneuron 1.
      
 0.430
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.