STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MAP1BMicrotubule associated protein 1B. (2454 aa)    
Predicted Functional Partners:
GAN
Gigaxonin.
    
 
 0.720
FMR1
Fragile X mental retardation 1.
    
 
 0.694
SQSTM1
Sequestosome 1.
    
 
 0.662
FXR2
FMR1 autosomal homolog 2.
    
 
 0.591
GPHN
Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.
   
  
 0.586
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 
 0.576
GABARAPL2
GABA type A receptor associated protein like 2.
    
 
 0.563
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
      
 0.522
MAP1LC3B
Uncharacterized protein.
    
 
 0.520
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
    
 
 0.520
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.