STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP48Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family. (1053 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.723
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.694
UBL7
Ubiquitin like 7.
   
 0.633
RPS27A
Ubiquitin-like domain-containing protein.
   
 0.633
NEDD8
NEDD8 ubiquitin like modifier.
   
 0.633
G3U9C8_LOXAF
Ubiquitin-like domain-containing protein.
   
 0.633
TRAF1
TNF receptor-associated factor.
    
 0.615
TRAF2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.615
VCPIP1
Valosin containing protein interacting protein 1.
    
 
 0.583
USP5
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
   
 
 0.566
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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