STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEKDEK proto-oncogene. (376 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.915
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.889
MYBBP1A
MYB binding protein 1a.
     
 0.848
DDX21
DExD-box helicase 21.
     
 0.790
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.756
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
    
 0.753
PGF
Placental growth factor; Belongs to the PDGF/VEGF growth factor family.
      
 0.725
SRRM1
Serine and arginine repetitive matrix 1.
    
 
 0.691
RNPS1
RNA binding protein with serine rich domain 1.
   
  
 0.680
TFAP2A
Transcription factor AP-2 alpha.
    
 0.669
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.