STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MINDY1MINDY lysine 48 deubiquitinase 1. (465 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
   0.805
UBB
Ubiquitin B.
    
   0.655
UBC
Uncharacterized protein.
    
   0.655
RPS27A
Ubiquitin-like domain-containing protein.
    
   0.595
G3U9C8_LOXAF
Ubiquitin-like domain-containing protein.
    
   0.595
DENND4C
DENN domain containing 4C.
      
 0.563
ANKFY1
Ankyrin repeat and FYVE domain containing 1.
      
 0.539
WHAMM
WASP homolog associated with actin, golgi membranes and microtubules.
      
 0.530
MMUT
Methylmalonyl-CoA mutase.
    
 0.506
SETD4
SET domain containing 4.
    
 0.506
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.