STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3U6T9_LOXAFUncharacterized protein. (182 aa)    
Predicted Functional Partners:
CDC40
Cell division cycle 40.
    
 0.956
DHX38
DEAH-box helicase 38.
    
 0.946
YJU2
YJU2 splicing factor homolog.
    
 0.940
SLU7
SLU7 homolog, splicing factor.
   
 0.934
G3STH0_LOXAF
Uncharacterized protein.
   
 
 0.912
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.908
CWC25
CWC25 spliceosome associated protein homolog.
   
 0.907
PPIL1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.906
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
    
 
 0.904
CDC5L
Cell division cycle 5 like.
    
 
 0.904
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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