STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3U8C5_LOXAFUncharacterized protein. (157 aa)    
Predicted Functional Partners:
CDC40
Cell division cycle 40.
    
  0.916
PRPF19
Pre-mRNA processing factor 19.
    
   0.810
CDC5L
Cell division cycle 5 like.
    
   0.809
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
   0.807
WDR25
WD_REPEATS_REGION domain-containing protein.
    
  0.805
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
    
   0.804
GPATCH1
G-patch domain containing 1.
    
 0.781
TCERG1
Transcription elongation regulator 1.
    
  0.682
SRRM1
Serine and arginine repetitive matrix 1.
     
 0.678
TCERG1L
Transcription elongation regulator 1 like.
    
  0.676
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.