STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3U9H1_LOXAFCSD domain-containing protein. (239 aa)    
Predicted Functional Partners:
SYNCRIP
Synaptotagmin binding cytoplasmic RNA interacting protein.
   
 0.707
HNRNPU
Heterogeneous nuclear ribonucleoprotein U.
   
 0.702
DDX6
DEAD-box helicase 6; Belongs to the DEAD box helicase family.
  
 0.625
HNRNPA2B1
Heterogeneous nuclear ribonucleoprotein A2/B1.
   
 0.600
HNRNPR
Heterogeneous nuclear ribonucleoprotein R.
   
 0.594
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
  
 0.568
FUS
FUS RNA binding protein.
   
 0.565
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
    
 0.563
SNRPD3
Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing.
   
 0.551
SNRNP48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
    
 0.538
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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