STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MRPL54Mitochondrial ribosomal protein L54. (139 aa)    
Predicted Functional Partners:
MRPL17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.927
MRPS16
Mitochondrial ribosomal protein S16.
   
   0.921
MRPL27
Mitochondrial ribosomal protein L27.
   
 
 0.913
G3TR24_LOXAF
Uncharacterized protein.
   
 
 0.911
MRPL46
Mitochondrial ribosomal protein L46.
   
 
 0.909
MRPL47
Mitochondrial ribosomal protein L47.
   
 
 0.905
MRPL49
Mitochondrial ribosomal protein L49.
   
 
 0.896
MRPL43
Mitochondrial ribosomal protein L43.
   
 
 0.887
MRPS25
Mitochondrial ribosomal protein S25.
   
 
 0.885
MRPL40
Mitochondrial ribosomal protein L40.
   
 
 0.883
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.