STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTBP1Polypyrimidine tract binding protein 1. (547 aa)    
Predicted Functional Partners:
G3U4N4_LOXAF
RRM domain-containing protein.
  
0.720
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
   
 0.711
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L like.
   
0.640
G3T3J4_LOXAF
RRM domain-containing protein.
   
 0.629
HNRNPA2B1
Heterogeneous nuclear ribonucleoprotein A2/B1.
   
 0.625
SRSF1
Uncharacterized protein.
   
 0.618
POLR2A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.612
SRSF2
RRM domain-containing protein.
   
 0.571
TRA2B
Transformer 2 beta homolog.
   
 0.556
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.532
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.