STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPLOC4NPL4 homolog, ubiquitin recognition factor. (609 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.999
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
   
 0.999
UBXN7
UBX domain-containing protein 7.
    
 0.999
FANCM
FA complementation group M.
   
 0.998
FAF2
Fas associated factor family member 2.
   
 0.965
FAF1
Fas associated factor 1.
   
 0.960
ASPSCR1
TUG-UBL1 domain-containing protein.
   
 
 0.944
VCPIP1
Valosin containing protein interacting protein 1.
    
 
 0.938
NSFL1C
NSFL1 cofactor.
    
 
 0.929
UBAC2
UBA domain containing 2.
    
 
 0.926
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.