STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCO1Single-pass membrane protein with coiled-coil domains 1. (214 aa)    
Predicted Functional Partners:
UBXN7
UBX domain-containing protein 7.
      
 0.725
WDR53
WD repeat domain 53.
      
 0.525
ZDHHC19
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.522
PIGX
Phosphatidylinositol glycan anchor biosynthesis class X.
      
 0.522
PCYT1A
Phosphate cytidylyltransferase 1, choline, alpha.
      
 0.499
MAPK8IP3
Mitogen-activated protein kinase 8 interacting protein 3.
    
   0.489
TCTEX1D2
Uncharacterized protein.
      
 0.444
CEP19
Centrosomal protein 19.
      
 0.430
UPK2
Uroplakin 2.
  
     0.400
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.