STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLOD1Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1. (772 aa)    
Predicted Functional Partners:
COL5A2
Collagen type V alpha 2 chain.
   
 0.770
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
  
0.660
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
  
0.641
COL1A1
Collagen type I alpha 1 chain.
   
 0.633
COL3A1
Collagen type III alpha 1 chain.
   
 0.614
P3H4
Prolyl 3-hydroxylase family member 4 (non-enzymatic).
   
 
 0.552
P4HA2
Prolyl 4-hydroxylase subunit alpha 2.
   
  
 0.551
COLGALT2
Collagen beta(1-O)galactosyltransferase 2.
   
0.550
CERCAM
Cerebral endothelial cell adhesion molecule.
   
0.550
COLGALT1
Collagen beta(1-O)galactosyltransferase 1.
   
0.550
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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